rs26835509 SNP Detail

Summary

• ID
  rs26835509
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29122564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGCTCGAC CTCCCATCGT CTTCACGAAT GACTCGAACA
  CCCTCACCCC GTCTCAGTCC TTTTCGGGCT GTCAGCCTGA GTCCCTACAC TTGGCTTCAC
  Y
  CTAGTCCTGT GCACGCATTC GGACTTCTCA GCCTGGCTCT GTTCTGCTGA GAGCAAGTCC
  AGAGTTGACA ACCCGCCACA TGACCAACAT CAGCCCTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37063737	NES08359040	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T	C	T	C
ss131889934	ENSMUSSNP2569039	ENSEMBL	ENSEMBL_Sanger	f	SNP					C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs26835509					SNP	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063737	NES08359040	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29122564 () rs orientation: forward

Symbol	Name	Function Class
A630052C17Rik	RIKEN cDNA A630052C17 gene	within coordinates
Cpgi2670	CpG island 2670	within coordinates
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B	326 bp upstream
Rr369144	regulatory region 369144	118 bp upstream
Rr444150	regulatory region 444150	within coordinates
Rr444151	regulatory region 444151	928 bp proximal
Tssr100691	transcription start site region 100691	349 bp upstream
Tssr100692	transcription start site region 100692	370 bp upstream
Tssr100693	transcription start site region 100693	384 bp upstream
Tssr107208	transcription start site region 107208	163 bp downstream