rs26835511 SNP Detail

Summary

• ID
  rs26835511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29122302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGAAACCG TTCTTGCGGC ACATGAAGCT GAGAGCTCCC
  CGAGGATTGT GAGGCTGTAC GCCTGTGCTT GCCTCGTCGC TGCCGCCGGT CTCTCTGAAC
  Y
  TTTTAATGGT CCGTGGTACC CGGCTAACGG AAGAACGCTT CGGCGGGAAA TAGGAACTGT
  CAACGCGTTT GTGGAACATT AGATCGCCCA CTGCTCATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37063739	NES08359038	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	T	C	T
ss131889925	ENSMUSSNP2265559	ENSEMBL	ENSEMBL_Sanger	f	SNP	T				T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs26835511					SNP	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063739	NES08359038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29122302 () rs orientation: forward

Symbol	Name	Function Class
A630052C17Rik	RIKEN cDNA A630052C17 gene	within coordinates
Cpgi2670	CpG island 2670	within coordinates
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B	588 bp upstream
Rr369144	regulatory region 369144	380 bp upstream
Rr444150	regulatory region 444150	98 bp proximal
Rr444151	regulatory region 444151	1190 bp proximal
Tssr100691	transcription start site region 100691	611 bp upstream
Tssr100692	transcription start site region 100692	632 bp upstream
Tssr100693	transcription start site region 100693	646 bp upstream
Tssr107208	transcription start site region 107208	425 bp downstream