rs26835512 SNP Detail

Summary

• ID
  rs26835512
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29121669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCTCTTGC CAACGTTCTT TTCTCCTTTA GAGTGGGCAA
  TGAAAAGGAT GCTTAGACAA ATCCTTGGGT GTCCTCTAAC ATTGGGCTAA AACACTGACT
  S
  TGGAAAGCTT TCTATGGCCT TCCCCAAACA AGTCATATTT TCCCTGGTTC AAAGTACATT
  TTGTCCATAT CAGTCACAGA TTATCAGGGA CTTATGTAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37063740	NES08359037	PERLEGEN	MM_PANEL2	f	SNP		G	C	G		G	C	G	C	G
ss38706678	mCV24536214	ABI	CRAMUS_MOUSE	f	SNP	C	G			C
ss131889919	ENSMUSSNP410928	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs26835512					SNP	C	G	C	G	C	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063740	NES08359037	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29121669 () rs orientation: forward

Symbol	Name	Function Class
A630052C17Rik	RIKEN cDNA A630052C17 gene	within coordinates
Cpgi2670	CpG island 2670	276 bp proximal
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B	1221 bp upstream
Rr369144	regulatory region 369144	1013 bp upstream
Rr444150	regulatory region 444150	731 bp proximal
Rr444151	regulatory region 444151	1823 bp proximal
Tssr100691	transcription start site region 100691	1244 bp upstream
Tssr100692	transcription start site region 100692	1265 bp upstream
Tssr100693	transcription start site region 100693	1279 bp upstream
Tssr107208	transcription start site region 107208	1058 bp downstream