rs26835513 SNP Detail

Summary

• ID
  rs26835513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29121464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATCAGGGG CTCATTTGGG CTACAACCTT TTGGAGTTGT
  AGTTTCCTTG TAAAAGACTC TGGGGGAAGG TATGGCTATG GCACAGTGAT GCTTCCAGAC
  Y
  ACAGCATAAG CTGGATGGAC CCTGACCAAA ACATTCTACA GAGAATGCTC TGGGCACCTG
  AAATTTCTGT CCTAAAGGCT GAGTGGGCTT CCAGGATCTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	NZW/LacJ
ss37063741	NES08359036	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	NZW/LacJ
rs26835513					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063741	NES08359036	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29121464 () rs orientation: forward

Symbol	Name	Function Class
A630052C17Rik	RIKEN cDNA A630052C17 gene	within coordinates
Cpgi2670	CpG island 2670	481 bp proximal
Ppp4r3b	protein phosphatase 4 regulatory subunit 3B	1426 bp upstream
Rr369144	regulatory region 369144	1218 bp upstream
Rr444150	regulatory region 444150	936 bp proximal
Tssr100691	transcription start site region 100691	1449 bp upstream
Tssr100692	transcription start site region 100692	1470 bp upstream
Tssr100693	transcription start site region 100693	1484 bp upstream
Tssr107208	transcription start site region 107208	1263 bp downstream