rs26843407 SNP Detail

Summary

• ID
  rs26843407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:33865708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATATTGTC TCTGAAGAGT
  CGCCTCTTTA TGCAACCTCC AGAAGAGGGT TGTTATCTCT GAAGATGCAG GGACACAGAA
  GTGCCAGGAC AAACAGGCCT TGATGAGTCC CCTGTTTGTG ATCACCAAAT CACAGCCCCT
  TTGTTCAGTT ACAAGTTCTC ACATCATGAT TGACATAAGG ACACACCTGT TTCCCTGACG
  Y
  GTTGGCTCTT CATTTCTGGA GGCTCTCGAA ACATAATACC AAGAAACTGA TTTTCTCCTC
  CCATGCTGAT ACCTCAGCTG TGAGCCTAAC CAAGGTGAGG GGACATCTTT TCTTTCCTGC
  AGATGCATTT TTAAAGCAGT GTATGTGTGT GTGTGTGTGT GTGTGTGTGT GCATATATAT
  GTATGTGTAT ATATGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37054833	NES08350263	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26843407					SNP	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37054833	NES08350263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33865708 () rs orientation: forward

Symbol	Name	Function Class
Kcnip1	Kv channel-interacting protein 1	within coordinates
Rr444858	regulatory region 444858	1819 bp proximal
Tssr3460	transcription start site region 3460	330 bp upstream