rs26843410 SNP Detail

Summary

• ID
  rs26843410
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:33865565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGCACG GGACAGCATG
  CAGGATGCTT CTGCATGCCT TGTTATCTGA GATAACTGCA GAAGCAAAGT CACCCTGCAG
  CCCTCTCCCT TCTCCTTTGA AGCCAGCCAT AAAAGGATCC TTGGCCCTCA CTGAGAGGTG
  AGTAGATATT GTCTCTGAAG AGTCGCCTCT TTATGCAACC TCCAGAAGAG GGTTGTTATC
  K
  CTGAAGATGC AGGGACACAG AAGTGCCAGG ACAAACAGGC CTTGATGAGT CCCCTGTTTG
  TGATCACCAA ATCACAGCCC CTTTGTTCAG TTACAAGTTC TCACATCATG ATTGACATAA
  GGACACACCT GTTTCCCTGA CGCGTTGGCT CTTCATTTCT GGAGGCTCTC GAAACATAAT
  ACCAAGAAAC TGATTTTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37054836	NES08350260	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26843410					SNP	T	T	T	T	T	T	T	T	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37054836	NES08350260	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33865565 () rs orientation: forward

Symbol	Name	Function Class
Kcnip1	Kv channel-interacting protein 1	within coordinates
Rr444858	regulatory region 444858	1962 bp proximal
Tssr3460	transcription start site region 3460	187 bp upstream