rs26843411 SNP Detail

Summary

• ID
  rs26843411
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:33864629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTCAGTGC AGGGAGCTGA
  TGGGAGGAGG CAGCAGAGGT ACCGATGGCA GTCCTGCAGT CGAGACATCA GAGAAGAAGC
  AAGTGGGAGT GGGGGAGCGC TGTGCAAAGA CCTGGGGTGG GGAGGAGTGT GGGTGGCTTT
  GGGGTGTGAT GAATTTCCTC ACAAGGGAAT GGATTGAGAG AGCTTGCTGA GGTCAGTGGC
  W
  TTGGAACATC GCATGTCACT ACAGGGTGGA GGAGCGGCTG GGGCTCATAT GGGAGTCAAG
  GCAGCCATGC TAAGGAACAC TGAAAAGCTA GGGAAGTTTT CTCAGGGATC AAAGGAAGCA
  ATAAGAGAGC TGGCAGAGCA GCAGAGGACT GGGGCGAGGG GGTGCCATAA AGTCCAACCT
  GACCAGTGTG CCCTGCCGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37054837	NES08350299	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs26843411					SNP	T	T	T	T	T	T	T	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37054837	NES08350299	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33864629 () rs orientation: forward

Symbol	Name	Function Class
Kcnip1	Kv channel-interacting protein 1	within coordinates
Tssr3460	transcription start site region 3460	748 bp downstream