rs26843412 SNP Detail

Summary

• ID
  rs26843412
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:33864324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCCAACC CCACTTCTTT
  CCCAACTCAT TGATATATAA GCTCCTATCC CAGTCCCTTA ATCTCCGTAA TGTCTGTGAA
  CTAAACGAGT TCCCCTCGTG TTCATCTACG CACGGTCAAT TAATTCACAG TGGCTCATCC
  CATCATTAGA ACCTGGCTGG CAGAAAGTTT CCCTTCCCAC AGAACGTTAG AAGCATGCAG
  R
  CGTCCAAGCG GCAGTGCTGG GTGTGGTGAA AGGGATCCAA GGAGTCAGCG CAGTGTGGAC
  TGTGTCCCAA GTACACTGCA GACACACGGT GCCCCACAGT GTACCGCTCA GTGCAGGGAG
  CTGATGGGAG GAGGCAGCAG AGGTACCGAT GGCAGTCCTG CAGTCGAGAC ATCAGAGAAG
  AAGCAAGTGG GAGTGGGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37054838	NES08350298	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26843412					SNP	G	G	G	G	G	G	G	G	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37054838	NES08350298	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:33864324 () rs orientation: forward

Symbol	Name	Function Class
Kcnip1	Kv channel-interacting protein 1	within coordinates
Rr444857	regulatory region 444857	1700 bp distal
Tssr3460	transcription start site region 3460	1053 bp downstream