rs26854020 SNP Detail

Summary

• ID
  rs26854020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32009981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCTGCGT CATGGTCCTG
  ACATCATAGC AAGGCACTGA CATGCCGGTT AAGGGACCAC CATGGTGACC CTGTATTTTA
  CTACCTGATC ACATATTGTG GTTCTCAGCT GGTGCTGAGC ACCTGCATAT GATATTCAGT
  TTCTAAAATG CTGCTTGCAG GCCTGCCTTG ATGCTGAGTG GCATGTGACA TTGAGGTCCC
  R
  ACATGATGCT GAAGTCACAG CGCTATTCTG AAGTCCTCGT AGGATATTAA AACAAGGTCC
  TGACATGGCG CTGAGCTCTA AACATGACAA TATTGAATGT CTAACATGAC ACAGAGGTCC
  AGACATGACA GAGAAGACAT AACATGATAC TGGAGATCCA TTCATGATGC AGGTACTGAC
  AAGATGTCAA GGTCTGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37058260	NES08352031	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26854020					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37058260	NES08352031	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32009981 () rs orientation: forward

Symbol	Name	Function Class
Nsg2	neuron specific gene family member 2	779 bp downstream
Rr444481	regulatory region 444481	1695 bp proximal
Tssr100827	transcription start site region 100827	1118 bp downstream
Tssr100828	transcription start site region 100828	1081 bp downstream