rs26854023 SNP Detail

Summary

• ID
  rs26854023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32009482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTGGGAT TGGTAAGTCC
  AGGAGCAGAG TGCCCTATGA CGTGGGAGGA GAAACTGGGA TAGTGTGTGT GGGGGGGGGT
  CTCTATCTTA AAGTAAGTAT AGCCTGATAC ACTGCTAAAG TCCTGGCACG ATGCGGAGCC
  CTGGGCAAGA TCCTGAAGCC CTACAAAATC TTAAGGACTA CTCATGATCC TGAGAATGTC
  R
  CGTGACACCA GAGCCTCATG TGGTAAAGAG GTCAAGATAT GCCACTAAGG AGCTAATAGG
  ATGCCGAAGG ACCCTATGAT ATGATATATG AAGTATCATG ATATGACATG AAGTATGTTA
  TACCAAGAGG CCTGCAATGC TGAGGTTATG ATATGCTGCT GCTGTTATGA TTGATTCAGA
  AGGCCTGACA TAATACCGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37058263	NES08352027	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs26854023					SNP	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37058263	NES08352027	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32009482 () rs orientation: forward

Symbol	Name	Function Class
Nsg2	neuron specific gene family member 2	280 bp downstream
Tssr100825	transcription start site region 100825	1799 bp downstream
Tssr100826	transcription start site region 100826	1698 bp downstream
Tssr100827	transcription start site region 100827	619 bp downstream
Tssr100828	transcription start site region 100828	582 bp downstream