rs26854028 SNP Detail

Summary

• ID
  rs26854028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32006907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATA GTTGGAAACG CCTAAGTCAA
  Y
  CCCTTATAAA CAGAGGACAT TTATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37058268	NES08352022	PERLEGEN	MM_PANEL2	f	SNP	T	T	T		T	T	C
ss323629145	CHEV_11_31956907	CHEVERUD	SCREENING_POP	f	SNP				C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs26854028					SNP	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37058268	NES08352022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32006907 () rs orientation: forward

Symbol	Name	Function Class
Nsg2	neuron specific gene family member 2	within coordinates
Tssr100825	transcription start site region 100825	762 bp upstream
Tssr100826	transcription start site region 100826	855 bp upstream
Tssr100827	transcription start site region 100827	1935 bp upstream
Tssr100828	transcription start site region 100828	1982 bp upstream