rs26857453 SNP Detail

Summary

• ID
  rs26857453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28804748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCGAAGCAA AATAAATTAA ACAACACTTT AATATGACTC
  AGGTTTAGGA CTCCTGGTAA ATCGTGCTGG GTCTTTTCAA AGGTGCATCT AGATCACCTG
  Y
  GATGAATGGT TTGTAAGCTA GATGCAAAAT AAAATGATTT GTGCAAAGCC AAAAATGAAC
  TCTTTTAAAA TTCAAATCTG TGTAAGCTCC ATATTTCGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ
ss37064091	NES08361050	PERLEGEN	MM_PANEL2	f	SNP				T		T	C	C
ss38839408	mCV24782163	ABI	CRAMUS_MOUSE	f	SNP	C	C	T		C	T
ss131883408	ENSMUSSNP6140275	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ
rs26857453					SNP	C	C	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37064091	NES08361050	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28804748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2668	CpG island 2668	1094 bp distal
D11Mit172	DNA segment, Chr 11, Massachusetts Institute of Technology 172	1997 bp distal
Efemp1	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	within coordinates
Rr246450	regulatory region 246450	547 bp distal
Tssr3451	transcription start site region 3451	975 bp downstream
Tssr3452	transcription start site region 3452	950 bp downstream
Tssr100686	transcription start site region 100686	1489 bp downstream
Tssr100687	transcription start site region 100687	426 bp downstream