rs26858800 SNP Detail

Summary

• ID
  rs26858800
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:23233914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGTACC AAGCATTTTA
  AAATTGAAAG TGTGGGTAGG CTGACCTTGA CCTCTTGGTC TTTATGGATC CACCTCCCAA
  GTTTTGGAAT TACAAATGTG TGATTATGCC TCCTATGTAA GTTTGACTTT GAGCTTGGTA
  GCCAATCCTA GCCTCTAAAT AGGAATCCAC TCAGTTTTAG AAATGCTGAG GCTGTAGGGT
  K
  TGCAACTGTG TGCGCCTGAG TATTTACTCT CAATTCTTTT GTTAGAATTA GTTTGATTTG
  TGTGACATCT TAATTAGTAT ATGCTTTGGG GGGGTGTTTG AGACAGGGTT TCTCTGTATA
  GTCCTGGCTG TCCTGGAACT CACTCTGTAG ACCAGGCTGG CCTCCAACTC AGAAATCCGC
  CTGTCTCTGC CTCCCGAGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37074237	NES08370962	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26858800					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37074237	NES08370962	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:23233914 () rs orientation: forward

Symbol	Name	Function Class
Tssr100618	transcription start site region 100618	389 bp upstream
Tssr100619	transcription start site region 100619	741 bp upstream
Xpo1	exportin 1	Intron