rs26871497 SNP Detail

Summary

• ID
  rs26871497
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29475944 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAAATAA AAAAGACAAA
  AATTTTTTAA AGAAAATGAG TGGACTGAGG GACCTGAGTT TAGGGTAGAC AATGAGAGAT
  AATGGTAAAG CGTGCTTTGG GATAAGAAAC TTTTCTATGC TATTCCCTTA ATCTGTGGTA
  GTGCTAGGTG TAAACGAGTT ACCCTCAAGA GATGATGATG GCTGTGGCCA AAGAGGAGAC
  M
  GGAAAAACTC CAAAGTGAAG AAAAACAACC AAAATCATAA CGAAAAACGT TTACTTGACT
  CGTACTCTCA ACAAGTCACT GAAACCTTCC CACGATCTTA TGAAGTCCGT ACCGTGATTC
  CATACAACAG ATAAAGTCGA GGCACAGAGT TGACAACACA CCTCTAAGTT CACACTGTGA
  ACGGGCTGGG CCAGCAGCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37063336	NES08364601	PERLEGEN	MM_PANEL2	f	SNP		A	C	C	A	A	C	A		A		A	C	A		C
ss131895985	ENSMUSSNP1162783	ENSEMBL	ENSEMBL_Sanger	f	SNP	C										A
ss323610908	CHEV_11_29425944	CHEVERUD	SCREENING_POP	f	SNP									A						C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26871497					SNP	C	A	C	C	A	A	C	A	A	A	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063336	NES08364601	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29475944 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	110 bp proximal
Gm57396	predicted gene, 57396	35 bp downstream
Mtif2	mitochondrial translational initiation factor 2	464 bp upstream
Rr369145	regulatory region 369145	350 bp upstream
Rr444173	regulatory region 444173	within coordinates
Rr444174	regulatory region 444174	430 bp proximal
Rr444175	regulatory region 444175	524 bp proximal
Tssr100719	transcription start site region 100719	463 bp upstream
Tssr100720	transcription start site region 100720	479 bp upstream
Tssr107213	transcription start site region 107213	399 bp downstream