rs26871499 SNP Detail

Summary

• ID
  rs26871499
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:29475713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGTTTTCA GGAGTCTCTA TAGTCATTAA TACTGACTGA
  ATCTTTGTGA TGGAAAGGGG TAAGGGTAAT GAGATGGCTA CGTGAATAAA GGAGCTTATT
  K
  CAAGCCTGAG TTCCTGAATT CAGTGTGTGT ATACAAATAA AAAAGACAAA AATTTTTTAA
  AGAAAATGAG TGGACTGAGG GACCTGAGTT TAGGGTAGAC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37063338	NES08364599	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	G	G	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26871499					SNP	T	G	T	T	G	G	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063338	NES08364599	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29475713 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2674	CpG island 2674			341 bp proximal
Gm57396	predicted gene, 57396			266 bp downstream
Mtif2	mitochondrial translational initiation factor 2			mRNA-UTR
				Noncoding-Transcript-Variant
Rr369145	regulatory region 369145			581 bp upstream
Rr444173	regulatory region 444173			110 bp proximal
Rr444174	regulatory region 444174			661 bp proximal
Rr444175	regulatory region 444175			755 bp proximal
Tssr100719	transcription start site region 100719			694 bp upstream
Tssr100720	transcription start site region 100720			710 bp upstream
Tssr107213	transcription start site region 107213			630 bp downstream