rs26871500 SNP Detail

Summary

• ID
  rs26871500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29475572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGAACTG CAAAAAAGGC
  CATGTGGTTG AGGTTGTAGA GGTAAAGGGA ATGTCCAGGT GCAAGCAAAT GAACAGGTGG
  TTGGATGTAA ATTTTAGTAG GCCACACATT ATTTTAGCTG GTTTCTCAAT GCTTGCCAAA
  GCAAGTGAGA GCAAAGAACT GCTTACAGAA AGTGAACTTC AATACATGTT TATGAACTTG
  R
  GTCATTTTCA AGTGTGGGCT TAATGGAGAT TCAGATAAAA AAGGTTTTCA GGAGTCTCTA
  TAGTCATTAA TACTGACTGA ATCTTTGTGA TGGAAAGGGG TAAGGGTAAT GAGATGGCTA
  CGTGAATAAA GGAGCTTATT TCAAGCCTGA GTTCCTGAAT TCAGTGTGTG TATACAAATA
  AAAAAGACAA AAATTTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37063339	NES08364598	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	A	G		G		G
ss323610905	CHEV_11_29425572	CHEVERUD	SCREENING_POP	f	SNP							A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs26871500					SNP	G	A	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063339	NES08364598	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29475572 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	482 bp proximal
Gm57396	predicted gene, 57396	407 bp downstream
Mtif2	mitochondrial translational initiation factor 2	836 bp upstream
Rr369145	regulatory region 369145	722 bp upstream
Rr444173	regulatory region 444173	251 bp proximal
Rr444174	regulatory region 444174	802 bp proximal
Rr444175	regulatory region 444175	896 bp proximal
Tssr100719	transcription start site region 100719	835 bp upstream
Tssr100720	transcription start site region 100720	851 bp upstream
Tssr107213	transcription start site region 107213	771 bp downstream