rs26871501 SNP Detail

Summary

• ID
  rs26871501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29475415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCTACA GAATGGCTAC
  AGACGTTGAA AGGGTTAAAG CCGAGTTAAG GACTTTCAAA GAGGCCTGAG AAGCAGAAGC
  TGAAAACTAA CAGAAAAAGT GTCTGAGGAA AAGACAATGC ACCCAGGCCG GAGGTCGGAT
  GGAATGATGA TGACAGAGTT TGAACTGCAA AAAAGGCCAT GTGGTTGAGG TTGTAGAGGT
  R
  AAGGGAATGT CCAGGTGCAA GCAAATGAAC AGGTGGTTGG ATGTAAATTT TAGTAGGCCA
  CACATTATTT TAGCTGGTTT CTCAATGCTT GCCAAAGCAA GTGAGAGCAA AGAACTGCTT
  ACAGAAAGTG AACTTCAATA CATGTTTATG AACTTGGGTC ATTTTCAAGT GTGGGCTTAA
  TGGAGATTCA GATAAAAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37063340	NES08364597	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	G		G	G	A	G		G	G	A	G		A
ss38835484	mCV25279107	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss131895979	ENSMUSSNP6346844	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss323610904	CHEV_11_29425415	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26871501					SNP	A	A	G	G	A	A	G	A	G	G	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063340	NES08364597	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29475415 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	639 bp proximal
Gm57396	predicted gene, 57396	564 bp downstream
Mtif2	mitochondrial translational initiation factor 2	993 bp upstream
Rr369145	regulatory region 369145	879 bp upstream
Rr444173	regulatory region 444173	408 bp proximal
Rr444174	regulatory region 444174	959 bp proximal
Rr444175	regulatory region 444175	1053 bp proximal
Tssr100719	transcription start site region 100719	992 bp upstream
Tssr100720	transcription start site region 100720	1008 bp upstream
Tssr107213	transcription start site region 107213	928 bp downstream