rs26871503 SNP Detail

Summary

• ID
  rs26871503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29474527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTAAAAGTG AACGATTAGG ATTTTGTTTT AACACCCCTT
  ATCTAATCTA TATGTTTTCT GAAGGAAAAC ATCATCCCTC CTGCAAATGT AGTCCTTATT
  R
  TACACTGTTA CCAGTACCCA ATAAATTGGC TCCAGGTTTG CCAGGACTAG CTTGTAACCA
  AAGTCATTCA AAGGCAGAAA AACAACTCCA CAGATAAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37063342	NES08364603	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G		G	G	A	G		G	G		A
ss38833965	mCV25279139	ABI	CRAMUS_MOUSE	f	SNP		A	G				A		G
ss131895964	ENSMUSSNP5223431	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss323610899	CHEV_11_29424527	CHEVERUD	SCREENING_POP	f	SNP												G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs26871503					SNP	A	A	G	A	A	G	A	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063342	NES08364603	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29474527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2674	CpG island 2674	1527 bp proximal
Gm57396	predicted gene, 57396	1452 bp downstream
Mtif2	mitochondrial translational initiation factor 2	1881 bp upstream
Rr369145	regulatory region 369145	1767 bp upstream
Rr444173	regulatory region 444173	1296 bp proximal
Rr444174	regulatory region 444174	1847 bp proximal
Rr444175	regulatory region 444175	1941 bp proximal
Tssr100719	transcription start site region 100719	1880 bp upstream
Tssr100720	transcription start site region 100720	1896 bp upstream
Tssr107213	transcription start site region 107213	1816 bp downstream