rs26871524 SNP Detail

Summary

• ID
  rs26871524
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29455353 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAGAAATA GTTAATAGTT CATCTTTATT TGAACTAATG
  CTTGCACTTA TAAAACATTG TTCAAATTTA AAATACTGTT TATTCATAAA TGTGTTATTC
  M
  TGGAGTTTTC TATCAAATTT AAATGTAACT TACACAGTGA GTAGGCATGT TTGTATTACA
  GTTCCCTTCT TGGTGCTGTT CCTTTCCCGA TAAATGCAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37063364	NES08363105	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C	A		A	C		C		C
ss38751019	mCV25279731	ABI	CRAMUS_MOUSE	f	SNP	C	C	A				C	A
ss131895767	ENSMUSSNP1655446	ENSEMBL	ENSEMBL_Sanger	f	SNP			A					A
ss323610828	CHEV_11_29405353	CHEVERUD	SCREENING_POP	f	SNP										A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs26871524					SNP	C	C	A	C	C	A	C	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063364	NES08363105	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29455353 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88a	coiled coil domain containing 88A	within coordinates
Rr239823	regulatory region 239823	1153 bp distal
Rr239824	regulatory region 239824	448 bp proximal
Rr249497	regulatory region 249497	153 bp distal
Tssr100714	transcription start site region 100714	1364 bp downstream
Tssr100715	transcription start site region 100715	207 bp upstream