rs26871525 SNP Detail

Summary

• ID
  rs26871525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29454646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGTTAGTAA CATAAGTGGG TTACCTCCCA AGTCACCACT
  CACTAGAATA ACTGGCCAGA CCTTTGCCTC TTTGGATAAA ACTGCACAGA AAGATAACAA
  R
  CATTTTTCTG ATAGTCAGAA CCCCAGTCAC AGTAAGACAC AGTTCTCTGA AGATAGCGAT
  CTTATCATTC CTGCATGCCT CTACCCTGAT GACACAGAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37063365	NES08363104	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	G		G	G	A	G		G	G	A	G		A
ss38658567	mCV25280093	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		G
ss131895761	ENSMUSSNP1137216	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss323610826	CHEV_11_29404646	CHEVERUD	SCREENING_POP	f	SNP													G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26871525					SNP	A	A	G	G	A	A	G	A	G	G	A	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063365	NES08363104	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29454646 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88a	coiled coil domain containing 88A	within coordinates
Rr239823	regulatory region 239823	446 bp distal
Rr239824	regulatory region 239824	1155 bp proximal
Rr249497	regulatory region 249497	within coordinates
Tssr100714	transcription start site region 100714	657 bp downstream
Tssr100715	transcription start site region 100715	914 bp upstream