rs26871527 SNP Detail

Summary

• ID
  rs26871527
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:29453752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCGAGCC CATCACAAGA
  TGAAAGCTGG CTCCCCAGGA AGTGAAGTTG TTACTCTACA ACAGTTTTTG GAAGAAAGCA
  ACAAGCTTAC CTCAATACAG GTTAGTTCTT TATATGGTAA ACTTGATTTA AATGAGCAAC
  ACTAGTTAAA TGCATTGTAA CTGAACCTTA GGAGGGAAAA AAATTAAGTT ATAGTGTACT
  R
  AGAGATAACA CCAACTCTTT AGTGTGTAGT TCAGTTTATC AGGAGACTAA AAATGTCTAT
  ATTCTTGTCT ATAATCTGCA CTGTTTTGCC TTTTAACAGT TGAAGTCCTC GAGTCAAGAG
  AATCTTTTAG ATGAAGTAAT GAAAAGTTTG TCTGTGTCTT CCGACTTTCT GGGGAAAGAC
  AAGCCAGTTA GCTGTACCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
ss37063367	NES08363102	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	PWD/PhJ	WSB/EiJ
rs26871527					SNP	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37063367	NES08363102	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:29453752 () rs orientation: forward

Symbol	Name	Function Class
Ccdc88a	coiled coil domain containing 88A	within coordinates
Rr239823	regulatory region 239823	49 bp proximal
Rr249497	regulatory region 249497	649 bp proximal
Tssr100714	transcription start site region 100714	225 bp upstream
Tssr100715	transcription start site region 100715	1808 bp upstream