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rs26883175 SNP Detail
Summary
  • ID
    rs26883175
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:36570421 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTGGTGCAAA AAGAATAAGA
    CACTTTTGCC TGCCCCAGTC ACAATGTGGT ATTCAAAGTG GGCTTGCTTA ATCTTGTTAT
    GCCAGAGCAT AACTCTTTTC ATGCTCTGCC AATAGAAGGA TATGTGTTTT GCTTGGACCC
    AAATAAAGAA GTACCCCCAT CTTGGATACG CTCAGATGTA ACTCTACTGA TTATTAAGGC
    R
    GTAAAAGGAG TGGAGAACAC ACAGTGGCTG AACAGAAAGC TGCTGGCCAG AGGACAGAGG
    ACTCAGAGTG GAAGAGAAGC TGTAAGGCTC CTGCTTTCTG AAAGGGTTGA ATTCCAAACT
    CTCCACAGAA TTTTTTCAGA GCACATTGAA AGCAGCAGCC TCAGAGTGAC ATTATTGATA
    CAGGGTCTAG AGGTAAAATT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37115394 NES08347575 PERLEGEN MM_PANEL2 f SNP G G G G A G G G G G G G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs26883175 SNP G G G G A G G G G G G G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37115394 NES08347575 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:36570421 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr246545 regulatory region 246545 420 bp distal
Tenm2 teneurin transmembrane protein 2 within coordinates
Tssr107450 transcription start site region 107450 1904 bp upstream
Tssr107451 transcription start site region 107451 1852 bp upstream
Tssr107452 transcription start site region 107452 1808 bp upstream
Tssr107453 transcription start site region 107453 1757 bp upstream
Tssr107454 transcription start site region 107454 1700 bp upstream
Tssr107455 transcription start site region 107455 1655 bp upstream
Tssr107456 transcription start site region 107456 1628 bp upstream
Tssr107457 transcription start site region 107457 1054 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory