rs26883175 SNP Detail

Summary

• ID
  rs26883175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:36570421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTGCAAA AAGAATAAGA
  CACTTTTGCC TGCCCCAGTC ACAATGTGGT ATTCAAAGTG GGCTTGCTTA ATCTTGTTAT
  GCCAGAGCAT AACTCTTTTC ATGCTCTGCC AATAGAAGGA TATGTGTTTT GCTTGGACCC
  AAATAAAGAA GTACCCCCAT CTTGGATACG CTCAGATGTA ACTCTACTGA TTATTAAGGC
  R
  GTAAAAGGAG TGGAGAACAC ACAGTGGCTG AACAGAAAGC TGCTGGCCAG AGGACAGAGG
  ACTCAGAGTG GAAGAGAAGC TGTAAGGCTC CTGCTTTCTG AAAGGGTTGA ATTCCAAACT
  CTCCACAGAA TTTTTTCAGA GCACATTGAA AGCAGCAGCC TCAGAGTGAC ATTATTGATA
  CAGGGTCTAG AGGTAAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37115394	NES08347575	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26883175					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37115394	NES08347575	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:36570421 () rs orientation: forward

Symbol	Name	Function Class
Rr246545	regulatory region 246545	420 bp distal
Tenm2	teneurin transmembrane protein 2	within coordinates
Tssr107450	transcription start site region 107450	1904 bp upstream
Tssr107451	transcription start site region 107451	1852 bp upstream
Tssr107452	transcription start site region 107452	1808 bp upstream
Tssr107453	transcription start site region 107453	1757 bp upstream
Tssr107454	transcription start site region 107454	1700 bp upstream
Tssr107455	transcription start site region 107455	1655 bp upstream
Tssr107456	transcription start site region 107456	1628 bp upstream
Tssr107457	transcription start site region 107457	1054 bp upstream