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rs26883176 SNP Detail
Summary
  • ID
    rs26883176
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:36570124 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTCCATGGTA ACCTGAGCCA
    ACACAGTCGT GAGCTCGCAG GAAGAGGAGA CGCCCAACCT TTCGATGGAC CATCTCCTCA
    AAATCATGTT TCTGTAAGAT CAGAAGGTCA AATCCATGCA CCAGACTTAG AACACTTACC
    AATTCAGGAA AAACAAAACA AAACCTAAAC AACAATAACG AGATAACTCA ATAGTCCTTC
    Y
    TTGAATTTCT ACCACGTCAT AGTCTAAGAG TCTGCCCGAG GACCCTCAGC ATCTTGTAGT
    TTGGAATTCC TATGTGAGCC AGATGTAGAA TTTGAATTGG TGCAAAAAGA ATAAGACACT
    TTTGCCTGCC CCAGTCACAA TGTGGTATTC AAAGTGGGCT TGCTTAATCT TGTTATGCCA
    GAGCATAACT CTTTTCATGC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37115395 NES08347574 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs26883176 SNP T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37115395 NES08347574 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:36570124 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2736 CpG island 2736 1717 bp distal
Rr246545 regulatory region 246545 123 bp distal
Tenm2 teneurin transmembrane protein 2 within coordinates
Tssr107449 transcription start site region 107449 1756 bp upstream
Tssr107450 transcription start site region 107450 1607 bp upstream
Tssr107451 transcription start site region 107451 1555 bp upstream
Tssr107452 transcription start site region 107452 1511 bp upstream
Tssr107453 transcription start site region 107453 1460 bp upstream
Tssr107454 transcription start site region 107454 1403 bp upstream
Tssr107455 transcription start site region 107455 1358 bp upstream
Tssr107456 transcription start site region 107456 1331 bp upstream
Tssr107457 transcription start site region 107457 757 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory