rs26883176 SNP Detail

Summary

• ID
  rs26883176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:36570124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATGGTA ACCTGAGCCA
  ACACAGTCGT GAGCTCGCAG GAAGAGGAGA CGCCCAACCT TTCGATGGAC CATCTCCTCA
  AAATCATGTT TCTGTAAGAT CAGAAGGTCA AATCCATGCA CCAGACTTAG AACACTTACC
  AATTCAGGAA AAACAAAACA AAACCTAAAC AACAATAACG AGATAACTCA ATAGTCCTTC
  Y
  TTGAATTTCT ACCACGTCAT AGTCTAAGAG TCTGCCCGAG GACCCTCAGC ATCTTGTAGT
  TTGGAATTCC TATGTGAGCC AGATGTAGAA TTTGAATTGG TGCAAAAAGA ATAAGACACT
  TTTGCCTGCC CCAGTCACAA TGTGGTATTC AAAGTGGGCT TGCTTAATCT TGTTATGCCA
  GAGCATAACT CTTTTCATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37115395	NES08347574	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26883176					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37115395	NES08347574	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:36570124 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2736	CpG island 2736	1717 bp distal
Rr246545	regulatory region 246545	123 bp distal
Tenm2	teneurin transmembrane protein 2	within coordinates
Tssr107449	transcription start site region 107449	1756 bp upstream
Tssr107450	transcription start site region 107450	1607 bp upstream
Tssr107451	transcription start site region 107451	1555 bp upstream
Tssr107452	transcription start site region 107452	1511 bp upstream
Tssr107453	transcription start site region 107453	1460 bp upstream
Tssr107454	transcription start site region 107454	1403 bp upstream
Tssr107455	transcription start site region 107455	1358 bp upstream
Tssr107456	transcription start site region 107456	1331 bp upstream
Tssr107457	transcription start site region 107457	757 bp upstream