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rs26883177 SNP Detail
Summary
  • ID
    rs26883177
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:36570020 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAGTTAAAT TCCCTCAGTG
    ACCTCTTTTA TAAGGATGTA AATTGCTGAT TCCAAGGTCA AGTATTTGGT AGAAGTTAGT
    TATTGGTGAG ATAACTGCCT GTTTTTCCAT GGTAACCTGA GCCAACACAG TCGTGAGCTC
    GCAGGAAGAG GAGACGCCCA ACCTTTCGAT GGACCATCTC CTCAAAATCA TGTTTCTGTA
    R
    GATCAGAAGG TCAAATCCAT GCACCAGACT TAGAACACTT ACCAATTCAG GAAAAACAAA
    ACAAAACCTA AACAACAATA ACGAGATAAC TCAATAGTCC TTCTTTGAAT TTCTACCACG
    TCATAGTCTA AGAGTCTGCC CGAGGACCCT CAGCATCTTG TAGTTTGGAA TTCCTATGTG
    AGCCAGATGT AGAATTTGAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37115396 NES08347573 PERLEGEN MM_PANEL2 f SNP A A A A G A G A A A G A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs26883177 SNP A A A A G A G A A A G A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37115396 NES08347573 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:36570020 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2736 CpG island 2736 1613 bp distal
Rr246545 regulatory region 246545 19 bp distal
Tenm2 teneurin transmembrane protein 2 within coordinates
Tssr107449 transcription start site region 107449 1652 bp upstream
Tssr107450 transcription start site region 107450 1503 bp upstream
Tssr107451 transcription start site region 107451 1451 bp upstream
Tssr107452 transcription start site region 107452 1407 bp upstream
Tssr107453 transcription start site region 107453 1356 bp upstream
Tssr107454 transcription start site region 107454 1299 bp upstream
Tssr107455 transcription start site region 107455 1254 bp upstream
Tssr107456 transcription start site region 107456 1227 bp upstream
Tssr107457 transcription start site region 107457 653 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory