rs26883179 SNP Detail

Summary

• ID
  rs26883179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:36569764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTTCCCTC CAAATGTGAT
  GACTGGTGGC TTTCTGGAGT CCTGGGGCAG AGTTTTTGAG GCACTATTTG CCATGGACTT
  ACACTGCATC TTCCTACCTT CCTCGACTAT TTTAAAAGGA GGCTCCATTT TTTAAAAAAA
  AAAAAAAAAA ACAAAGTGGC AAAGAAATGA TTTGCCCATT CAAATCACTT CCAGGGCTGC
  Y
  TCATGAGCTT TGTTCTATTT CCACTGTCCT CTAGCCACAC GGGGGCCAGG ATTACACAGT
  TAAATTCCCT CAGTGACCTC TTTTATAAGG ATGTAAATTG CTGATTCCAA GGTCAAGTAT
  TTGGTAGAAG TTAGTTATTG GTGAGATAAC TGCCTGTTTT TCCATGGTAA CCTGAGCCAA
  CACAGTCGTG AGCTCGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37115398	NES08347571	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26883179					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37115398	NES08347571	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:36569764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2736	CpG island 2736	1357 bp distal
Rr246545	regulatory region 246545	within coordinates
Tenm2	teneurin transmembrane protein 2	within coordinates
Tssr107449	transcription start site region 107449	1396 bp upstream
Tssr107450	transcription start site region 107450	1247 bp upstream
Tssr107451	transcription start site region 107451	1195 bp upstream
Tssr107452	transcription start site region 107452	1151 bp upstream
Tssr107453	transcription start site region 107453	1100 bp upstream
Tssr107454	transcription start site region 107454	1043 bp upstream
Tssr107455	transcription start site region 107455	998 bp upstream
Tssr107456	transcription start site region 107456	971 bp upstream
Tssr107457	transcription start site region 107457	397 bp upstream