rs26883180 SNP Detail

Summary

• ID
  rs26883180
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:36569667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTAGAAAG AAAGGCACAA
  TAAAAGGGAG ACATAGTGTT TGAAGGAAAG GTCTTAGGGA AGAAGCTTTT TGTAACGCAC
  ACACCTAAAT TCTCCCTGGT TTCCCTCCAA ATGTGATGAC TGGTGGCTTT CTGGAGTCCT
  GGGGCAGAGT TTTTGAGGCA CTATTTGCCA TGGACTTACA CTGCATCTTC CTACCTTCCT
  S
  GACTATTTTA AAAGGAGGCT CCATTTTTTA AAAAAAAAAA AAAAAAACAA AGTGGCAAAG
  AAATGATTTG CCCATTCAAA TCACTTCCAG GGCTGCCTCA TGAGCTTTGT TCTATTTCCA
  CTGTCCTCTA GCCACACGGG GGCCAGGATT ACACAGTTAA ATTCCCTCAG TGACCTCTTT
  TATAAGGATG TAAATTGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37115399	NES08347570	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	G	C	C	G		G	C	G	G		C
ss323643779	CHEV_11_36492342	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26883180					SNP	C	C	C	C	G	C	G	C	C	G	C	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37115399	NES08347570	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:36569667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2736	CpG island 2736	1260 bp distal
Rr246545	regulatory region 246545	within coordinates
Tenm2	teneurin transmembrane protein 2	within coordinates
Tssr107449	transcription start site region 107449	1299 bp upstream
Tssr107450	transcription start site region 107450	1150 bp upstream
Tssr107451	transcription start site region 107451	1098 bp upstream
Tssr107452	transcription start site region 107452	1054 bp upstream
Tssr107453	transcription start site region 107453	1003 bp upstream
Tssr107454	transcription start site region 107454	946 bp upstream
Tssr107455	transcription start site region 107455	901 bp upstream
Tssr107456	transcription start site region 107456	874 bp upstream
Tssr107457	transcription start site region 107457	300 bp upstream