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rs26883181 SNP Detail
Summary
  • ID
    rs26883181
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:36569500 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      CTTGATAAT TGTCTTAAAA AAAAAAAAAA
    AAAAGAGGAA CCCACCCTAA AATATTAGCA CTTGCAAAAA TAGTGTTTCT TGGCTCAAGT
    TTAAAAGGTG ATTTTTCTCC CTTAGTTTTT TAGAAAGAAA GGCACAATAA AAGGGAGACA
    Y
    AGTGTTTGAA GGAAAGGTCT TAGGGAAGAA GCTTTTTGTA ACGCACACAC CTAAATTCTC
    CCTGGTTTCC CTCCAAATGT GATGACTGGT GGCTTTCTGG AGTCCTGGGG CAGAGTTTTT
    GAGGCACTAT TTGCCATGGA CTTACACTGC                                 
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss37115400 NES08347569 PERLEGEN MM_PANEL2 f SNP T T T T T T T T C T C T T
ss323643778 CHEV_11_36492175 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs26883181 SNP T T T T T T T T C T T C T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37115400 NES08347569 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:36569500 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2736 CpG island 2736 1093 bp distal
Rr246545 regulatory region 246545 within coordinates
Tenm2 teneurin transmembrane protein 2 within coordinates
Tssr107449 transcription start site region 107449 1132 bp upstream
Tssr107450 transcription start site region 107450 983 bp upstream
Tssr107451 transcription start site region 107451 931 bp upstream
Tssr107452 transcription start site region 107452 887 bp upstream
Tssr107453 transcription start site region 107453 836 bp upstream
Tssr107454 transcription start site region 107454 779 bp upstream
Tssr107455 transcription start site region 107455 734 bp upstream
Tssr107456 transcription start site region 107456 707 bp upstream
Tssr107457 transcription start site region 107457 133 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory