rs26883181 SNP Detail

Summary

• ID
  rs26883181
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:36569500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGATAAT TGTCTTAAAA AAAAAAAAAA
  AAAAGAGGAA CCCACCCTAA AATATTAGCA CTTGCAAAAA TAGTGTTTCT TGGCTCAAGT
  TTAAAAGGTG ATTTTTCTCC CTTAGTTTTT TAGAAAGAAA GGCACAATAA AAGGGAGACA
  Y
  AGTGTTTGAA GGAAAGGTCT TAGGGAAGAA GCTTTTTGTA ACGCACACAC CTAAATTCTC
  CCTGGTTTCC CTCCAAATGT GATGACTGGT GGCTTTCTGG AGTCCTGGGG CAGAGTTTTT
  GAGGCACTAT TTGCCATGGA CTTACACTGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37115400	NES08347569	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		T	C	T		T
ss323643778	CHEV_11_36492175	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26883181					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37115400	NES08347569	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:36569500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2736	CpG island 2736	1093 bp distal
Rr246545	regulatory region 246545	within coordinates
Tenm2	teneurin transmembrane protein 2	within coordinates
Tssr107449	transcription start site region 107449	1132 bp upstream
Tssr107450	transcription start site region 107450	983 bp upstream
Tssr107451	transcription start site region 107451	931 bp upstream
Tssr107452	transcription start site region 107452	887 bp upstream
Tssr107453	transcription start site region 107453	836 bp upstream
Tssr107454	transcription start site region 107454	779 bp upstream
Tssr107455	transcription start site region 107455	734 bp upstream
Tssr107456	transcription start site region 107456	707 bp upstream
Tssr107457	transcription start site region 107457	133 bp upstream