rs26883182 SNP Detail

Summary

• ID
  rs26883182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:36568226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCATATTT CTCATCTCTC
  CCCTTAAATA AAAGGGAGGA AAAAAATCAT TCCATATAAA TGCATTTACT ATACAAATCT
  ATTTTCAATT GAATTTGCTG CATGCTCTAA TTCATCAAAA TTAATACAGG TACTTTCTAT
  GTTAAACAAA AGGAAGCCGA CTGAAAAATC GGCTTCTGCT GCAGATGCCT TTCTCAATTA
  Y
  AAAACCGGTG AAAACAGAAA TTTAACTAAG CCACTCGGTC AAACCCTCCG ATCGGCTCGG
  CGCTCTTACC TGCCTCAGCT GAAGGCTTCC TTCCCTTGTT AGCAGTGTGC AGCATCGCTA
  GCTCGCTCCA ATCCTCACCA CGGGCTCAAA TTACACCACC GCTAAGTCCA CCCCCTCGCC
  TTTCCCCTTC TCTGCCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37115401	NES08347612	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C		C	T	C	C		T
ss323643774	CHEV_11_36490901	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26883182					SNP	T	T	T	T	C	T	T	T	C	T	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37115401	NES08347612	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:36568226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2736	CpG island 2736	27 bp proximal
Rr246545	regulatory region 246545	within coordinates
Tenm2	teneurin transmembrane protein 2	within coordinates
Tssr107449	transcription start site region 107449	92 bp downstream
Tssr107450	transcription start site region 107450	282 bp downstream
Tssr107451	transcription start site region 107451	332 bp downstream
Tssr107452	transcription start site region 107452	373 bp downstream
Tssr107453	transcription start site region 107453	419 bp downstream
Tssr107454	transcription start site region 107454	468 bp downstream
Tssr107455	transcription start site region 107455	514 bp downstream
Tssr107456	transcription start site region 107456	551 bp downstream
Tssr107457	transcription start site region 107457	1135 bp downstream