rs26883184 SNP Detail

Summary

• ID
  rs26883184
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:36566800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTACCGGG ACCTTCCCAG
  GAAACTCCTA CCCGGGATAA ACTCTGGATG TTGTCCAGAC GTTGTCTGAC CAGAGCCACT
  TTCCACTTGT TCCTCCTTGC CCAGTACCGA GCCTGTCCCC ATGCCCTCTC AAGGCTGAAT
  CCATGAGCTG CATGTACAAG ATGCCATTAG GTGGGTCTGG CAACACAAGA TACTCCAGAT
  M
  GAGGTGTTAA ACAGCCAGTC CAGTTTGGAA ACTAAGCAAG AAAACATTCT ATCACGACAC
  AAATGTGTGA AATACTATCT TTCTGTGCTC ACTGAACTCC ACAGAGCCAT AGAAGGGCAG
  TTTTTCCTAG GGCCAAGCCT AGAGGCACGG CCATCACCTT TCCATATTCC CTTCCCAGGA
  AGCATTCTCT TTAATCAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37115403	NES08347610	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	C	A	C		C	A	C	C		A
ss323643771	CHEV_11_36489475	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26883184					SNP	A	A	A	A	C	A	C	A	C	A	C	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37115403	NES08347610	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:36566800 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2736	CpG island 2736	1453 bp proximal
Rr233627	regulatory region 233627	800 bp distal
Rr246545	regulatory region 246545	within coordinates
Tenm2	teneurin transmembrane protein 2	within coordinates
Tssr107449	transcription start site region 107449	1518 bp downstream
Tssr107450	transcription start site region 107450	1708 bp downstream
Tssr107451	transcription start site region 107451	1758 bp downstream
Tssr107452	transcription start site region 107452	1799 bp downstream
Tssr107453	transcription start site region 107453	1845 bp downstream
Tssr107454	transcription start site region 107454	1894 bp downstream
Tssr107455	transcription start site region 107455	1940 bp downstream
Tssr107456	transcription start site region 107456	1977 bp downstream