rs26884184 SNP Detail

Summary

• ID
  rs26884184
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3283267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGCAGG ATTTGATATC
  AGTTTAGGGG AGCATTTTAG GGAAGACCCT TCCCGAAACA TCCCCAACAG TCTTGTCAGG
  TTTGGCTGTA GAATGCACTT AGGACAGTCT TTGATGAGAG CTATTTCTCA CCTCACCTCC
  AGAGACCACT TCCCAAGCAC CACCGCCATC CTCTGCCATG GAGCTGGAAG AGAAGTCTGG
  K
  GCACCAGGTG ACAAAGAGGC ACAGGTGTTC CCTCCTGCTA ACGCCCTACC AGCCAGGAGT
  GAGGCAGCCG AGGTGCAGCC AGTGATCGGG ATCAGTCAGC TTGTGAGGAT GAACTCCAAG
  GAAAAAAAAG ACCTAGGAAC TCTGGGTATG GCTACGTGGG ATGGGGTTCC TCAGATGATA
  TCATTGGCTG ATTGTCCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37112505	NES08505099	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26884184					SNP	T	T	T	T	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37112505	NES08505099	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3283267 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	547 bp distal
Gm74265	predicted gene, 74265	within coordinates
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	within coordinates
Rr402383	regulatory region 402383	1358 bp downstream
Rr402384	regulatory region 402384	711 bp downstream
Rr441528	regulatory region 441528	1599 bp distal
Rr441529	regulatory region 441529	948 bp distal
Rr441530	regulatory region 441530	1430 bp proximal
Tssr3406	transcription start site region 3406	779 bp downstream
Tssr100049	transcription start site region 100049	807 bp downstream
Tssr100050	transcription start site region 100050	783 bp downstream
Tssr100051	transcription start site region 100051	756 bp downstream
Tssr106460	transcription start site region 106460	991 bp upstream
Tssr106461	transcription start site region 106461	966 bp upstream
Tssr106462	transcription start site region 106462	981 bp downstream