rs26884187 SNP Detail

Summary

• ID
  rs26884187
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3282826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAATTCA AAGCTTTTAG
  ACTTCAGAAA ACTAAAATAG TTCTCTAGGA TTAGATGAGG TGGTCAAGGT TAAGCACTTA
  ACACTGGGAT TGGCAGGAAT CTTGTACGCA GTGTGGATTG TCTTCTGCTG TGAAGACCTG
  TGCAGTCTCT GGAGAAACCG CGTGGCAATC CCAGCAAGGT GTTGGAAGAT CACAAAGACT
  K
  AAGCAGACAA GTGGGAGGCC AGAGAGAGGC TATTGTTTCT TGAGACCATT TCCTCACATT
  TGCCTTGTAA TATCCCAGCA TCCGTGCAGC CCTTTCAGGC CTGATTTTGC CCCTGGGGCA
  GGGGAGTTGT TTTCCCCCTT TCTGTTTTTG TGATAGGATC TCATTTTGCG GCCGGCTTGT
  TTGGCTGGCA GGGATTCACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37112508	NES08505096	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26884187					SNP	G	G	G	G	G	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37112508	NES08505096	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3282826 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	106 bp distal
Gm12592	predicted gene 12592	1636 bp upstream
Gm74265	predicted gene, 74265	10 bp downstream
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	within coordinates
Rr402383	regulatory region 402383	917 bp downstream
Rr402384	regulatory region 402384	270 bp downstream
Rr441528	regulatory region 441528	1158 bp distal
Rr441529	regulatory region 441529	507 bp distal
Rr441530	regulatory region 441530	1871 bp proximal
Tssr3406	transcription start site region 3406	338 bp downstream
Tssr100044	transcription start site region 100044	1996 bp downstream
Tssr100045	transcription start site region 100045	1983 bp downstream
Tssr100046	transcription start site region 100046	1914 bp downstream
Tssr100047	transcription start site region 100047	1892 bp downstream
Tssr100048	transcription start site region 100048	1865 bp downstream
Tssr100049	transcription start site region 100049	366 bp downstream
Tssr100050	transcription start site region 100050	342 bp downstream
Tssr100051	transcription start site region 100051	315 bp downstream
Tssr106459	transcription start site region 106459	1625 bp upstream
Tssr106460	transcription start site region 106460	550 bp upstream
Tssr106461	transcription start site region 106461	525 bp upstream
Tssr106462	transcription start site region 106462	1422 bp downstream