rs26884190 SNP Detail

Summary

• ID
  rs26884190
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3281560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTAAGAG ATGAGGCAGA
  GACCCTCAGC TGGGGTCTCT ATTGGATCTT TTGCTTCCCT GAATCAAAGG CTTTTGTGGA
  ATTCTCTTGG GAGCTGGCGG TGTCTGTTAA ACTAGCAGAA AGTGGCTGTA TTCGTAGAGA
  AGGGAACACC AGTTTATATA ACATTGACTT CTCAACACTG GGATGACTTC CATGTCTGAC
  K
  GCCCAGAACC AAACTCACCA TCTCCACAGA AAGACCTTAG GGAGAAAGAC CTTCTTGTAC
  CTTCAAAGTG GTCCCAAGTC CAAGAATAAC AACCCTTTGC AGTTGTGCAG CGATCTTAAG
  CTTTTTTAAA AGGAAGGAAG GAAGGAAGGA AGGAAGGAAG GAAGGAAGGA AGGAAGGAAG
  GAAGGAAGGA AGGGAAGGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37112511	NES08505126	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26884190					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37112511	NES08505126	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3281560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	212 bp proximal
Gm12592	predicted gene 12592	370 bp upstream
Gm74265	predicted gene, 74265	1276 bp downstream
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	within coordinates
Rr402383	regulatory region 402383	48 bp upstream
Rr402384	regulatory region 402384	695 bp upstream
Rr441527	regulatory region 441527	742 bp distal
Rr441528	regulatory region 441528	within coordinates
Rr441529	regulatory region 441529	259 bp proximal
Tssr3405	transcription start site region 3405	801 bp downstream
Tssr3406	transcription start site region 3406	925 bp upstream
Tssr100039	transcription start site region 100039	1019 bp downstream
Tssr100040	transcription start site region 100040	866 bp downstream
Tssr100041	transcription start site region 100041	811 bp downstream
Tssr100042	transcription start site region 100042	780 bp downstream
Tssr100043	transcription start site region 100043	748 bp downstream
Tssr100044	transcription start site region 100044	730 bp downstream
Tssr100045	transcription start site region 100045	717 bp downstream
Tssr100046	transcription start site region 100046	648 bp downstream
Tssr100047	transcription start site region 100047	626 bp downstream
Tssr100048	transcription start site region 100048	599 bp downstream
Tssr100049	transcription start site region 100049	866 bp upstream
Tssr100050	transcription start site region 100050	901 bp upstream
Tssr100051	transcription start site region 100051	934 bp upstream
Tssr106459	transcription start site region 106459	359 bp upstream
Tssr106460	transcription start site region 106460	693 bp downstream
Tssr106461	transcription start site region 106461	717 bp downstream