rs26884193 SNP Detail

Summary

• ID
  rs26884193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3281055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAACTGC TGCCAAGGAG
  GACCCCCCCC CCCCATTTGG ACACTGGCTG TTGAGTCACC TGCGAGCCGA AGAGACGAGG
  ATGCTGTTGG CTTGGGTACA CACATTTCTT CTCAGCAACA TGCTTCTGGC AGAAGCCTAT
  GGATCTGGAG GTGAGATTAC GTTTTCTCCC CCTTTCTGCA GCAACTTAAA TGAAACAGAT
  Y
  CCCCAAACGT GGTCAGGCCG ACAGGGAAGG AAGGTTTTGG CTGCTTTTCT CGTTATCCTA
  CGAAAGCATT CTTCTCTCCT CTCTCCTTCC TTGCCAGAGG CTTGCAGCTC CATCTTTGCC
  ATTAAGAACA AAGACAAGTA GTCACTTTCT CTTTCCCTTT CCTTTCACAC GAGTGGATGG
  AGTGGAATTC GTCTCTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37112514	NES08505123	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs26884193					SNP	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37112514	NES08505123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3281055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	717 bp proximal
Gm12592	predicted gene 12592	within coordinates
Gm74265	predicted gene, 74265	1781 bp downstream
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	within coordinates
Rr402383	regulatory region 402383	553 bp upstream
Rr402384	regulatory region 402384	1200 bp upstream
Rr441527	regulatory region 441527	237 bp distal
Rr441528	regulatory region 441528	113 bp proximal
Rr441529	regulatory region 441529	764 bp proximal
Tssr3405	transcription start site region 3405	296 bp downstream
Tssr3406	transcription start site region 3406	1430 bp upstream
Tssr100039	transcription start site region 100039	514 bp downstream
Tssr100040	transcription start site region 100040	361 bp downstream
Tssr100041	transcription start site region 100041	306 bp downstream
Tssr100042	transcription start site region 100042	275 bp downstream
Tssr100043	transcription start site region 100043	243 bp downstream
Tssr100044	transcription start site region 100044	225 bp downstream
Tssr100045	transcription start site region 100045	212 bp downstream
Tssr100046	transcription start site region 100046	143 bp downstream
Tssr100047	transcription start site region 100047	121 bp downstream
Tssr100048	transcription start site region 100048	94 bp downstream
Tssr100049	transcription start site region 100049	1371 bp upstream
Tssr100050	transcription start site region 100050	1406 bp upstream
Tssr100051	transcription start site region 100051	1439 bp upstream
Tssr106459	transcription start site region 106459	125 bp downstream
Tssr106460	transcription start site region 106460	1198 bp downstream
Tssr106461	transcription start site region 106461	1222 bp downstream