rs26885720 SNP Detail

Summary

• ID
  rs26885720
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6340785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGAGTGG CCTCCACATT
  CCCGCTTGAA ACCTTGTGCA TTGAAGTCAG GTTTGGTTGG GTTGTTGGCA GATGCTCATC
  CCTGGAGTCA TTCATGAATA CTTGTCTGCA CACTGAGGCT AGAGGGTAGG AAGTACTGTT
  GCGTGTACAT GCTGGGCAGG CAGGACCTCT AGCCTCTGGG CATTTGACCC TTCCTTAAAT
  R
  CTAGGGACTC CGTCTTTGCC ACACTTCACA CCTGTCACAT CCTTGTCCTC TCCTCTCGCC
  ATGTGATTTT ACCTCGAACT CGTAGGCTTA AAATGATCCT CCTGCCCCAA CCTCCTGAGT
  GTCTGAGACT ACAGGGTTAC ACCCTCACCC TCTCCTGGGA CTGTCATTTC TCTGCAGCCT
  TTTGGTCCTA GTTTCTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37107541	NES08499440	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	G	A		A	G	G	A	G	A	G	G	A
ss38710412	mCV22932795	ABI	CRAMUS_MOUSE	f	SNP		G	A					G		G
ss131642781	ENSMUSSNP1961311	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26885720					SNP	G	G	A	A	G	G	A	G	A	G	G	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37107541	NES08499440	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6340785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2557	CpG island 2557	713 bp distal
Rr246943	regulatory region 246943	within coordinates
Tssr100241	transcription start site region 100241	1705 bp downstream
Tssr100242	transcription start site region 100242	1679 bp downstream
Tssr100243	transcription start site region 100243	1648 bp downstream
Tssr100244	transcription start site region 100244	1388 bp downstream
Tssr100245	transcription start site region 100245	1350 bp downstream
Tssr100246	transcription start site region 100246	1332 bp downstream
Tssr100247	transcription start site region 100247	1212 bp downstream
Tssr100248	transcription start site region 100248	1189 bp downstream
Zmiz2	zinc finger, MIZ-type containing 2	within coordinates