rs26888734 SNP Detail

Summary

• ID
  rs26888734
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74817613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGAGAGA ATGCTTAATT
  TGCCAGTCTC CATTCGCATC AGAAAAGCGC GAGAAATATT TTGGTGTCTG GTCTCCTTCA
  TTAGCCAGTG TTGCTTAGGA TGACAGTTAC AGAAGATACC TTCTCTAGGA TTGTGGCTAG
  AATTTGTGAG GTTGGTTTTT ATTGGCCAAC TGAATTGGAT TAACCAGGCT GTTTTCTCTC
  W
  CTCCTCTGGA AAATAGTAGT CACCACCTCT CCTGGCTCCG CCCCAAAACT AAGTTTAAAA
  GTTTACTCAG GGTGCTGAGG TTAAACGGCT TTATCTTGGT TCACATTTGG TGGAGAAGCT
  AAACTTTTGC CAAGGCAGCA GTATCTTTTA TTTTGTGTTT GTTTTTCTTT TGAGACAAAG
  TCTCACCTTG TAGCCAATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37158556	NES08475622	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26888734					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158556	NES08475622	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74817613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	343 bp distal
Gm72316	predicted gene, 72316	431 bp downstream
Rr451010	regulatory region 451010	1025 bp distal
Rr451011	regulatory region 451011	954 bp distal
Rr451012	regulatory region 451012	678 bp distal
Rr451013	regulatory region 451013	758 bp distal
Rr451014	regulatory region 451014	within coordinates
Rr451015	regulatory region 451015	1243 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	within coordinates
Srr	serine racemase	839 bp upstream
Tssr102917	transcription start site region 102917	954 bp downstream
Tssr102918	transcription start site region 102918	920 bp downstream
Tssr102919	transcription start site region 102919	878 bp downstream
Tssr102920	transcription start site region 102920	654 bp downstream
Tssr102921	transcription start site region 102921	77 bp upstream
Tssr102922	transcription start site region 102922	905 bp upstream
Tssr102923	transcription start site region 102923	925 bp upstream
Tssr102924	transcription start site region 102924	939 bp upstream
Tssr109155	transcription start site region 109155	1071 bp upstream
Tssr109156	transcription start site region 109156	802 bp upstream
Tssr109157	transcription start site region 109157	732 bp downstream