rs26888737 SNP Detail

Summary

• ID
  rs26888737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74817010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGCAGGCC GGGAGCAGAG
  GTGAGTTGCG CCGCCCAGCT GCTGGGCCGG GCCTGCCCGC CCCGCCTCCC TCTCCTCTGC
  CTCCTCCCCG CCCCGTCCGC GGCGCTCCGA ACCCCCGCCC CTTCCCCAAC AGTGCGCCCG
  GGCCTGCGGC GGCCCCTGGG AGACAGCGAG GCTGTCGCTC CGCTCCCTCG GGCCCTCGGG
  R
  CAGAGCCCAA GCGCGAGTTT CAGCCTCCGC CCTCTTGCTC GGCGCGGCGC CGTGGTTGTT
  CTCCGGTGCC CTAACCCTCT CACGCCAGCG CCTGAGTTCC AGTCCGGAGG AGACACGAAC
  TGGCTTGGGT GCTAGGGTCC GGTAGAGGCC CCGAGACGTA TTGTTCCCAA AAGAATAGTC
  TGTGTATGTG TACCTTTCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37158559	NES08475618	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26888737					SNP	G	A	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158559	NES08475618	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74817010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	within coordinates
Gm72316	predicted gene, 72316	within coordinates
Rr451008	regulatory region 451008	1711 bp distal
Rr451009	regulatory region 451009	1835 bp distal
Rr451010	regulatory region 451010	422 bp distal
Rr451011	regulatory region 451011	351 bp distal
Rr451012	regulatory region 451012	75 bp distal
Rr451013	regulatory region 451013	155 bp distal
Rr451014	regulatory region 451014	within coordinates
Rr451015	regulatory region 451015	1846 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	within coordinates
Srr	serine racemase	236 bp upstream
Tssr102917	transcription start site region 102917	351 bp downstream
Tssr102918	transcription start site region 102918	317 bp downstream
Tssr102919	transcription start site region 102919	275 bp downstream
Tssr102920	transcription start site region 102920	51 bp downstream
Tssr102921	transcription start site region 102921	680 bp upstream
Tssr102922	transcription start site region 102922	1508 bp upstream
Tssr102923	transcription start site region 102923	1528 bp upstream
Tssr102924	transcription start site region 102924	1542 bp upstream
Tssr109155	transcription start site region 109155	468 bp upstream
Tssr109156	transcription start site region 109156	199 bp upstream
Tssr109157	transcription start site region 109157	1335 bp downstream