rs26888738 SNP Detail

Summary

• ID
  rs26888738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74816847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAGTGGG TGAGCGCGCG
  CCGCCCGTCC GTCGTGGTTT CCTGGCTGCG CGCGGCGGTG GCCGAGTCGC CGCAGCTGTA
  GCAGCCGCCG CGAAGATGGC GGAGGGGTTG GAGCGTGTGC GGATCTCCGC ATCGGAACTG
  CGAGGGATCC TGGCCACTCT GGCTCCGCAG GCCGGGAGCA GAGGTGAGTT GCGCCGCCCA
  R
  CTGCTGGGCC GGGCCTGCCC GCCCCGCCTC CCTCTCCTCT GCCTCCTCCC CGCCCCGTCC
  GCGGCGCTCC GAACCCCCGC CCCTTCCCCA ACAGTGCGCC CGGGCCTGCG GCGGCCCCTG
  GGAGACAGCG AGGCTGTCGC TCCGCTCCCT CGGGCCCTCG GGGCAGAGCC CAAGCGCGAG
  TTTCAGCCTC CGCCCTCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37158560	NES08475646	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26888738					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158560	NES08475646	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74816847 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	within coordinates
Gm72316	predicted gene, 72316	78 bp upstream
Rr451008	regulatory region 451008	1548 bp distal
Rr451009	regulatory region 451009	1672 bp distal
Rr451010	regulatory region 451010	259 bp distal
Rr451011	regulatory region 451011	188 bp distal
Rr451012	regulatory region 451012	within coordinates
Rr451013	regulatory region 451013	within coordinates
Rr451014	regulatory region 451014	89 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	within coordinates
Srr	serine racemase	73 bp upstream
Tssr102917	transcription start site region 102917	188 bp downstream
Tssr102918	transcription start site region 102918	154 bp downstream
Tssr102919	transcription start site region 102919	112 bp downstream
Tssr102920	transcription start site region 102920	60 bp upstream
Tssr102921	transcription start site region 102921	843 bp upstream
Tssr102922	transcription start site region 102922	1671 bp upstream
Tssr102923	transcription start site region 102923	1691 bp upstream
Tssr102924	transcription start site region 102924	1705 bp upstream
Tssr109155	transcription start site region 109155	305 bp upstream
Tssr109156	transcription start site region 109156	36 bp upstream
Tssr109157	transcription start site region 109157	1498 bp downstream