rs26888739 SNP Detail

Summary

• ID
  rs26888739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74816534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGCGCCTCA CCTCGCCTCC AGAGCGCTGC GCCTCCACCT
  CCGAGCCTCG GCGGACCGTC CTAGCTTTAC ACCTCTGCGC ACGCGCACAC GCCGTCTCCG
  Y
  GGCCGATTCG CCCGCTCCGG CAAGGCCCTA GTTGAACGTG CTGAATGCTT TTGCTCCCAG
  TGCGGCCACC GTCGTTTGGG GAGGGCAGGC AGGAGGGGGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37158561	NES08475645	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26888739					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158561	NES08475645	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74816534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3250	CpG island 3250	within coordinates
Gm72316	predicted gene, 72316	391 bp upstream
Rr451007	regulatory region 451007	1901 bp distal
Rr451008	regulatory region 451008	1235 bp distal
Rr451009	regulatory region 451009	1359 bp distal
Rr451010	regulatory region 451010	within coordinates
Rr451011	regulatory region 451011	55 bp proximal
Rr451012	regulatory region 451012	230 bp proximal
Rr451013	regulatory region 451013	300 bp proximal
Rr451014	regulatory region 451014	402 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor	131 bp upstream
Srr	serine racemase	within coordinates
Tssr102917	transcription start site region 102917	108 bp upstream
Tssr102918	transcription start site region 102918	129 bp upstream
Tssr102919	transcription start site region 102919	170 bp upstream
Tssr102920	transcription start site region 102920	373 bp upstream
Tssr102921	transcription start site region 102921	1156 bp upstream
Tssr102922	transcription start site region 102922	1984 bp upstream
Tssr109155	transcription start site region 109155	within coordinates
Tssr109156	transcription start site region 109156	217 bp downstream
Tssr109157	transcription start site region 109157	1811 bp downstream