rs26888740 SNP Detail

Summary

• ID
  rs26888740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:74816373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATACACGG AGCAATTTAC
  TTCTTCCACT CTCTGAGATT CCGTTTACCA GTAATGGGGA TAATAATAAA AGATATTTAA
  ACTCCACAAT CCAGGCCTAC GGTAAGGAGA CTTCGGCCTA AAATGATCGG AGGAGGCCGG
  GTTGTAGGAT GTCTCCGTCA ATCCGAGCCC CAGATCAAAA GCAGTGTCCT CGGTGGTCAC
  Y
  GCAGCAATAC TGGCATCCCT AGACCCGAAT GCCCACCTGA CATGGGCGAG TCACACCTGG
  CTGCGCCTCA CCTCGCCTCC AGAGCGCTGC GCCTCCACCT CCGAGCCTCG GCGGACCGTC
  CTAGCTTTAC ACCTCTGCGC ACGCGCACAC GCCGTCTCCG CGGCCGATTC GCCCGCTCCG
  GCAAGGCCCT AGTTGAACGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37158562	NES08475644	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26888740					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158562	NES08475644	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74816373 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3250	CpG island 3250			within coordinates
Gm72316	predicted gene, 72316			552 bp upstream
Rr451006	regulatory region 451006			1942 bp distal
Rr451007	regulatory region 451007			1740 bp distal
Rr451008	regulatory region 451008			1074 bp distal
Rr451009	regulatory region 451009			1198 bp distal
Rr451010	regulatory region 451010			within coordinates
Rr451011	regulatory region 451011			216 bp proximal
Rr451012	regulatory region 451012			391 bp proximal
Rr451013	regulatory region 451013			461 bp proximal
Rr451014	regulatory region 451014			563 bp proximal
Smg6	SMG6 nonsense mediated mRNA decay factor			292 bp upstream
Srr	serine racemase			Intron
				Noncoding-Transcript-Variant
Tssr102917	transcription start site region 102917			269 bp upstream
Tssr102918	transcription start site region 102918			290 bp upstream
Tssr102919	transcription start site region 102919			331 bp upstream
Tssr102920	transcription start site region 102920			534 bp upstream
Tssr102921	transcription start site region 102921			1317 bp upstream
Tssr109155	transcription start site region 109155			111 bp downstream
Tssr109156	transcription start site region 109156			378 bp downstream
Tssr109157	transcription start site region 109157			1972 bp downstream