rs26888839 SNP Detail

Summary

• ID
  rs26888839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:74760126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCGCCAT CTTGTCACTT
  CGCAGAAAGC CAGCAGCACG GCGTCTTAGC TGATGCAGGA GGCAAGCCTC CACAGCACCT
  GGCCATAGAG TAAAACAGGA CCTAGGTCAT CAGTCACCGC ACCTGGCCTT ACCCGGCTTC
  TCAGCAGCCT CTCAGCTGAA GGATGAGTTC TCCTGAGAGC TGGCTGAGGC AGTGCACAGA
  Y
  GTTATCACTA GGAACGAATA TTAATGGAAG CTCAGACATC AGACCCAGCC CCCTGTTTGT
  TCTGAATTCC TTCTGGTAAA CTCAGGTAAG GTACTAACCC ATCTAAGGAA GGAGAAATTC
  CTCTTGCCTT GAAACTACAG CACACCTGTA GACAGGCAGG GACCAGGGCA AGCCCTGAGC
  TGTGCTGGAA CGAGGGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37158667	NES08476298	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs26888839					SNP	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37158667	NES08476298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:74760126 () rs orientation: forward

Symbol	Name	Function Class
Gm73205	predicted gene, 73205	within coordinates
Gm73221	predicted gene, 73221	1539 bp downstream
Mir6926	microRNA 6926	1106 bp upstream
Rr450993	regulatory region 450993	286 bp proximal
Rr450994	regulatory region 450994	1621 bp proximal
Rr450995	regulatory region 450995	1815 bp proximal
Sgsm2	small G protein signaling modulator 2	within coordinates
Tssr109152	transcription start site region 109152	4 bp upstream