rs26888944 SNP Detail

Summary

• ID
  rs26888944
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:73134785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTTCATG TCGTGGTGAC
  CACCCTCCAA GAAAACTATT TTCATTGCTA CTAAATAACT GTATTTTTAC TACTGTTATG
  AATTACAATG TAGATATCTG TGTTTTCTGA GGGTTTAGGC AACCCCTATG AAAGGGTTGT
  TTGACCCCCA GGTTGAGAAC CACCGATTTA GGACCTGCCC AGTTTCTCAC CAGTCACTGT
  R
  CTCATGGAGA CACTGAAGCT ATGAGCGTGG TCAGTCAAGG AACCACAGCA AAGCAGGGAC
  CAACTCGAGG CCTTGGCTGT ACAGTGTCTC AGACCTCTGG TGACACTTGG TTGCTGGGCA
  TGCTGAGGGG ATAGTCATCC TTAACTGTGT GGGCTACACA GGAGTGAGGA GTGCCACACG
  GGTGTGGCTA TCCAGGTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37159463	NES08475975	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26888944					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37159463	NES08475975	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:73134785 () rs orientation: forward

Symbol	Name	Function Class
Rr236158	regulatory region 236158	1816 bp proximal
Trpv1	transient receptor potential cation channel, subfamily V, member 1	within coordinates