rs26888945 SNP Detail

Summary

• ID
  rs26888945
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:73134262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTTACTC CAAATAATAG
  ATCATCCCTG TAGTTGACAT CTCTTTAGAG GCCCTTGACT AGCAAGGAGC GTCCCATGCT
  CCAAAGTGTA TAAGGAGCCA CACACAAGTG TCTCTGTGGT AGAGTGTAAG TATGAGAGAG
  AGGCTAGGAC AAGCTGCCTT GGGCTCATAT GTTATACATC CTCGGTCCCA TGAGCCTTCA
  W
  GTCTTTGGAT ATGAGACTTT TGCCTAGAGG CTACTTCAAA TGACAGTATT TGGCACTGTC
  CTCCTGCTCT GGGACAGGCC TTTTAGGTTC CTTCACAAGC CATGTATAGG TCCTTGCCAT
  CTCTGCCTGA CCCAGGGCTG CAAACAGGAG AAATGAAGAC TGTGAAGGCA ACCCCAGCTT
  CCCAAGCAGC CTCTTGTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37159464	NES08475974	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26888945					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37159464	NES08475974	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:73134262 () rs orientation: forward

Symbol	Name	Function Class
Trpv1	transient receptor potential cation channel, subfamily V, member 1	within coordinates