rs26888980 SNP Detail

Summary

• ID
  rs26888980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:73126271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGACAGAC TGTCTTGCCC
  CTGTCTTTTC CCCTTAAATG TGCACCCCCC ACTCCTGTGT GCTGCCCAGC AATCGTCTCA
  CCAGTAAACT GGGAGAAGCT TGGTTTTCAG TGGGGGGCTG GAAGTAGAAT GTGAGCTGCT
  TCCTGCTTCC TGCTTCCTGC TTCCTGGTTT GGTTTGATTA GGGTCAGCCC AAGGAAGAGG
  Y
  AAAGACCCAA CCATCAGGAT TCCTTTACTC TTGGATTTGC AGGCAGCTTA TCCACAGGGC
  AACCATGGAC ATCGGAGAGA GTGAGGCATA GGATGTGTAC ATTACCTGCA CTTTGCTTGG
  GGTTTGGGGC ATCTAAGGAT GCTTGCTAGC TTCATCAGGA GGCTTCTTTA GATTTGGAGC
  TATGTCTGCT TCCAGGAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37159501	NES08475937	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	C	T	T		C	C	T	T		C
ss132423042	ENSMUSSNP4687692	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T
ss323746051	CHEV_11_73048947	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs26888980					SNP	C	C	T	C	C	C	C	T	T	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37159501	NES08475937	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:73126271 () rs orientation: forward

Symbol	Name	Function Class
Trpv1	transient receptor potential cation channel, subfamily V, member 1	within coordinates