rs26888988 SNP Detail

Summary

• ID
  rs26888988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:73125308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCTTACC ACACAGCAGC
  CTGGCTCTCC CACAAAGAAC AGCTCCAAGG CACTTGCTCC ATTTGGAGTG TGCCTGCACC
  TAGCTGGTAA GTCCTTCTCA TGGGCTGATG GCTCGCCACT GTCCAGCTGT GTGTGGTTCT
  GCGGGGCTCT GAGGGCCTCG GTGATCCCAT CTGAAAACTG GGTTAGTACA GTGGCTGCCT
  Y
  GGACTTCTGG GAGGCTGAAG CAACAGTACT GCACACTTAA CTTGGCTGAC TGTAGGCAGT
  GGGTCCCTGA GAGAGGTGGT GGTTAGTTGG TTTATGTTGG TTCCTGCAGG AGGATTGAGA
  GACTGCAGAT GCCGTAGAGC CCAGAGGTTT GTGCCTATCT GGAGGCCTTC CGTGGGCTGG
  CTTCTTTGTG CAGAGGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37159509	NES08475929	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26888988					SNP	T	C	T	T	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37159509	NES08475929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:73125308 () rs orientation: forward

Symbol	Name	Function Class
Rr251456	regulatory region 251456	894 bp proximal
Trpv1	transient receptor potential cation channel, subfamily V, member 1	within coordinates