rs26888989 SNP Detail

Summary

• ID
  rs26888989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:73125174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAATCG GAGCCGTGGC
  AACAGCAGCT GCTGCCATTG CTGCAAATGT TTCCTTGAGT GCCAGAGTAT GCCCAGAGCC
  CATCCCTGCC GTACACCAGG GGAGGGGCGA GGACCCTCAC AGAGGCAGGG AGGCCACTCT
  TACCACACAG CAGCCTGGCT CTCCCACAAA GAACAGCTCC AAGGCACTTG CTCCATTTGG
  R
  GTGTGCCTGC ACCTAGCTGG TAAGTCCTTC TCATGGGCTG ATGGCTCGCC ACTGTCCAGC
  TGTGTGTGGT TCTGCGGGGC TCTGAGGGCC TCGGTGATCC CATCTGAAAA CTGGGTTAGT
  ACAGTGGCTG CCTTGGACTT CTGGGAGGCT GAAGCAACAG TACTGCACAC TTAACTTGGC
  TGACTGTAGG CAGTGGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37159510	NES08475928	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs26888989					SNP	A	G	A	A	A	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37159510	NES08475928	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:73125174 () rs orientation: forward

Symbol	Name	Function Class
Rr251456	regulatory region 251456	1028 bp proximal
Trpv1	transient receptor potential cation channel, subfamily V, member 1	within coordinates