rs26888994 SNP Detail

Summary

• ID
  rs26888994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:73123600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTTAGGA TAATGAAGTT
  TAGACTCCCT ATGTCTTACC ACAATCTAAA AAAAACAAGA ACAAGCCCTT GGTATCCTAG
  GAACTGCAGC TAAAATGGAG CAGTGTGGTG AGGAATGGTT GCTAAGCCTG GCTCTCATGC
  CCAGACTAGT CATGTGATCT GAAAGTCATG TGATCTGAAT AACTGTCTAA CACCTCCGAG
  Y
  CACAGGTTTC TCTTCAGCCA CTTGAGTATG ACAGTCTTTG CTCCCCCTTG CTCAGGGTTG
  TTACTGGGCC TAGAGGTGGG TGTGGAGAAG CTCTTTGGTA CCCCTTCTGC AGGGTGGCTG
  GGAGTTACTG TGCTCTGATG ACTCCACTCT GGTCCCAGCT TTGTACTACT CCAGGAGGAG
  CTGCAGTGGC TGGTCTGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37159515	NES08475923	PERLEGEN	MM_PANEL2	f	SNP	T		C	T		T	T	T	C	C	C	T
ss38684560	mCV25414628	ABI	CRAMUS_MOUSE	f	SNP		T	C		T		T
ss132423019	ENSMUSSNP4457441	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26888994					SNP	T	T	C	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37159515	NES08475923	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:73123600 () rs orientation: forward

Symbol	Name	Function Class
Trpv1	transient receptor potential cation channel, subfamily V, member 1	1518 bp upstream