rs26890580 SNP Detail

Summary

• ID
  rs26890580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71783036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGAGGGAT GAAACATGGA AGCCAAAGAC ACTGCCAGGT
  AGGTTCAGAG CTCATCACCT AGACTTCCAA TCACTTCATA TCTGAGTGTT CAACACCACT
  Y
  TGTCAGACGG AGGCTACAGG GAAGAAAGAG CAAGAGACTA TGTTCTCTCT GTAGGTCTCT
  CATCATACTC AGACCACCTC GGTTGGGTTA TCAGCCTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37162604	NES08480617	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C		C	C	C	C	T	C
ss38843797	mCV25356702	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss132396320	ENSMUSSNP379286	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890580					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37162604	NES08480617	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71783036 () rs orientation: forward

Symbol	Name	Function Class
Gm46285	predicted gene, 46285	within coordinates