rs26890582 SNP Detail

Summary

• ID
  rs26890582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:71782900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCGCTGCT CTGATTGTGT
  TGAAGCAGCT TGTTATCCTG TCAGAGGCTC CGTGACCCAC AGGTGAGCTT TGTGGTCTTC
  AAGAGGCCTT GTAATTACTC TTGTAAGTCC CAGAGAGAAG TCACCAGAAT TATTAGGGCA
  ACTAAGGCCT CTGCAGGCTG AATCATTTCC CCAGATGGTG CCCTCTGCTA TTAAGGTTAG
  Y
  TTTGGACACA AGAACCAGGC ATCATCAGCA ACAAAACAGA GGGATGAAAC ATGGAAGCCA
  AAGACACTGC CAGGTAGGTT CAGAGCTCAT CACCTAGACT TCCAATCACT TCATATCTGA
  GTGTTCAACA CCACTCTGTC AGACGGAGGC TACAGGGAAG AAAGAGCAAG AGACTATGTT
  CTCTCTGTAG GTCTCTCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37162606	NES08480615	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890582					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37162606	NES08480615	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:71782900 () rs orientation: forward

Symbol	Name	Function Class
Gm46285	predicted gene, 46285	within coordinates