rs26890755 SNP Detail

Summary

• ID
  rs26890755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70418594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCTCCCT GAGGCCTGGT
  GTTCTAGGGA GTAGTAAAGG ATGGTCCATA CCGACGCAGA AGCTAATAAA CAGTTTGTTA
  AAGAGACGTT TCTGTGTGAA GGTTCTTGAC TTCAACTTCA ACTTGCCAAA ACCATTGTCT
  TGCGTAAACT ATTGCACTGA GCTCGGTAGG AATTAGAGAG GTAAGGAAGG TTTATCAGTG
  Y
  GCTGTTCTTT TATCATTACT AGCATTATTG GATTATTTTG GGGATGGCTG GTTGCATTAT
  GTTTTTAAAT AAAATGGTTT GTTTTATGTG CATTGTTGTT CTGCCTGCAT GTATGTGTGA
  GGGTGCCAGA TTATTGAAAT TTGAGTTACA GACAGTTGTG AGTTGCCCTG TGGGTGCTGG
  GAATTGAAAC CAGGCCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165474	NES08484024	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890755					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165474	NES08484024	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70418594 () rs orientation: forward

Symbol	Name	Function Class
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Tssr102729	transcription start site region 102729	1837 bp downstream
Tssr102730	transcription start site region 102730	1793 bp downstream
Tssr102731	transcription start site region 102731	1734 bp downstream
Tssr102732	transcription start site region 102732	1146 bp upstream