rs26890758 SNP Detail

Summary

• ID
  rs26890758
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70418226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGTCTGCA GTTCACTGCC AATGGTGAGA CTCTGTGCTT
  CCACGCCTGT GAACTTCAGC CCTCGTTCCC AAGCTGTGCC AAGGGTCCTC ACGTTCAGCT
  M
  CTAACTCCAA ACCCACTGTC CTCGTTTTAT CTACAGCTCT CGCTTTGGCC ATGGAACGCG
  ACGGCTCCAG TGGAGGGGTG ATCCGCTTGG CAGCCATTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37165477	NES08484021	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	C	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs26890758					SNP	A	A	A	A	A	A	C	C	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37165477	NES08484021	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70418226 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3188	CpG island 3188	1858 bp distal
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Tssr102729	transcription start site region 102729	1469 bp downstream
Tssr102730	transcription start site region 102730	1425 bp downstream
Tssr102731	transcription start site region 102731	1366 bp downstream
Tssr102732	transcription start site region 102732	1514 bp upstream